Search results for "Finite-state machine"

showing 10 items of 97 documents

A detailed experimental study of a DNA computer with two endonucleases

2017

Abstract Great advances in biotechnology have allowed the construction of a computer from DNA. One of the proposed solutions is a biomolecular finite automaton, a simple two-state DNA computer without memory, which was presented by Ehud Shapiro’s group at the Weizmann Institute of Science. The main problem with this computer, in which biomolecules carry out logical operations, is its complexity – increasing the number of states of biomolecular automata. In this study, we constructed (in laboratory conditions) a six-state DNA computer that uses two endonucleases (e.g. AcuI and BbvI) and a ligase. We have presented a detailed experimental verification of its feasibility. We described the effe…

0301 basic medicineTheoretical computer scienceDNA LigasesComputer scienceCarry (arithmetic)Oligonucleotides0102 computer and information sciencesBioinformatics01 natural sciencesGeneral Biochemistry Genetics and Molecular Biologylaw.inventionAutomationComputers Molecular03 medical and health sciencesDNA computinglawA-DNADeoxyribonucleases Type II Site-Specificchemistry.chemical_classificationDNA ligaseFinite-state machineBase Sequencebiomolecular computers; DNA computing; finite automataProcess (computing)DNAModels TheoreticalEndonucleasesAutomaton030104 developmental biologychemistry010201 computation theory & mathematicsWord (computer architecture)Zeitschrift für Naturforschung C
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Biomolecular computers with multiple restriction enzymes

2017

Abstract The development of conventional, silicon-based computers has several limitations, including some related to the Heisenberg uncertainty principle and the von Neumann “bottleneck”. Biomolecular computers based on DNA and proteins are largely free of these disadvantages and, along with quantum computers, are reasonable alternatives to their conventional counterparts in some applications. The idea of a DNA computer proposed by Ehud Shapiro’s group at the Weizmann Institute of Science was developed using one restriction enzyme as hardware and DNA fragments (the transition molecules) as software and input/output signals. This computer represented a two-state two-symbol finite automaton t…

0301 basic medicineTheoretical computer scienceDNA computerlcsh:QH426-4700102 computer and information sciencesBiology01 natural scienceslaw.inventionrestriction enzymesGenomics and Bioinformatics03 medical and health sciencessymbols.namesakeSoftwareDNA computinglawGeneticsNondeterministic finite automatonMolecular BiologyQuantum computerFinite-state machinebusiness.industryConstruct (python library)bioinformaticsDNARestriction enzymelcsh:Genetics030104 developmental biology010201 computation theory & mathematicssymbolsbusinessVon Neumann architectureGenetics and Molecular Biology
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Nonstochastic languages as projections of 2-tape quasideterministic languages

1998

A language L (n) of n-tuples of words which is recognized by a n-tape rational finite-probabilistic automaton with probability 1-e, for arbitrary e > 0, is called quasideterministic. It is proved in [Fr 81], that each rational stochastic language is a projection of a quasideterministic language L (n) of n-tuples of words. Had projections of quasideterministic languages on one tape always been rational stochastic languages, we would have a good characterization of the class of the rational stochastic languages. However we prove the opposite in this paper. A two-tape quasideterministic language exists, the projection of which on the first tape is a nonstochastic language.

AlgebraClass (set theory)TheoryofComputation_COMPUTATIONBYABSTRACTDEVICESFinite-state machineRegular languageProjection (mathematics)Deterministic automatonComputer scienceProbabilistic automatonCharacterization (mathematics)AlgorithmAutomaton
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On the decomposition of prefix codes

2017

Abstract In this paper we focus on the decomposition of rational and maximal prefix codes. We present an effective procedure that allows us to decide whether such a code is decomposable. In this case, the procedure also produces the factors of some of its decompositions. We also give partial results on the problem of deciding whether a rational maximal prefix code decomposes over a finite prefix code.

Block codePrefix codeGeneral Computer ScienceComputer science0102 computer and information sciences02 engineering and technologyPrefix grammarKraft's inequality01 natural sciencesPrefix codeTheoretical Computer SciencePrefix codes; Finite automata; Composition of codesComposition of codes0202 electrical engineering electronic engineering information engineeringDiscrete mathematicsSelf-synchronizing codeFinite-state machineSettore INF/01 - InformaticaComputer Science (all)Rational languageLinear codePrefixComposition of code010201 computation theory & mathematicsPrefix codes020201 artificial intelligence & image processingFinite automataComputer Science::Formal Languages and Automata Theory
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Business Modelling. Languages and Tools

2004

The paper provides an overview of business modelling techniques — both at language and tool level. The basic elements of some most popular business modelling languages are briefly outlined, including the GRAPES-BM language developed by IMCS, University of Latvia. The paper presents also the basic principles, how metamodel based generic modelling techniques can be used for supporting several modelling notations simultaneously.

Business Process Model and NotationFinite-state machineBusiness processComputer sciencebusiness.industryBusiness modellingProcess flow diagramBusiness process modelingNotationSoftware engineeringbusinessMetamodeling
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Models of Computation, Riemann Hypothesis, and Classical Mathematics

1998

Classical mathematics is a source of ideas used by Computer Science since the very first days. Surprisingly, there is still much to be found. Computer scientists, especially, those in Theoretical Computer Science find inspiring ideas both in old notions and results, and in the 20th century mathematics. The latest decades have brought us evidence that computer people will soon study quantum physics and modern biology just to understand what computers are doing.

Classical mathematicsFinite-state machineComputer sciencebusiness.industryModel of computationEpistemologyPhilosophy of computer sciencePhilosophy of languageTuring machinesymbols.namesakeRiemann hypothesisFormal languagesymbolsArtificial intelligencebusiness
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Ambainis-Freivalds’ Algorithm for Measure-Once Automata

2001

An algorithm given by Ambainis and Freivalds [1] constructs a quantum finite automaton (QFA) with O(log p) states recognizing the language Lp = {ai| i is divisible by p} with probability 1 - Ɛ , for any Ɛ > 0 and arbitrary prime p. In [4] we gave examples showing that the algorithm is applicable also to quantum automata of very limited size. However, the Ambainis-Freivalds algoritm is tailored to constructing a measure-many QFA (defined by Kondacs andWatrous [2]), which cannot be implemented on existing quantum computers. In this paper we modify the algorithm to construct a measure-once QFA of Moore and Crutchfield [3] and give examples of parameters for this automaton. We show for the lang…

CombinatoricsDiscrete mathematicsFinite-state machineQuantum finite automataSpace (mathematics)QuantumMeasure (mathematics)AlgorithmPrime (order theory)AutomatonMathematicsQuantum computer
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Improved Constructions of Quantum Automata

2008

We present a simple construction of quantum automata which achieve an exponential advantage over classical finite automata. Our automata use $\frac{4}{\epsilon} \log 2p + O(1)$ states to recognize a language that requires p states classically. The construction is both substantially simpler and achieves a better constant in the front of logp than the previously known construction of [2]. Similarly to [2], our construction is by a probabilistic argument. We consider the possibility to derandomize it and present some preliminary results in this direction.

CombinatoricsDiscrete mathematicsFinite-state machineSimple (abstract algebra)Quantum automataProbabilistic logicQuantum finite automataConstant (mathematics)MathematicsAutomatonExponential function
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Tally languages accepted by alternating multitape finite automata

1997

We consider k-tape 1-way alternating finite automata (k-tape lafa). We say that an alternating automaton accepts a language L\(\subseteq\)(Σ*)k with f(n)-bounded maximal (respectively, minimal) leaf-size if arbitrary (respectively, at least one) accepting tree for any (w1, w2,..., wk) ∈ L has no more than $$f\mathop {(\max }\limits_{1 \leqslant i \leqslant k} \left| {w_i } \right|)$$ leaves. The main results of the paper are the following. If k-tape lafa accepts language L over one-letter alphabet with o(log n)-bounded maximal leaf-size or o(log log n)-bounded minimal leaf-size then the language L is semilinear. Moreover, if a language L is accepted with o(log log(n))-bounded minimal (respe…

CombinatoricsTree (descriptive set theory)Finite-state machineLog-log plotAlphabetBinary logarithmComputer Science::Formal Languages and Automata TheoryMathematics
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Codification schemes and finite automata

2000

This paper is a note on how Information Theory and Codification Theory are helpful in the computational design both of communication protocols and strategy sets in the framework of finitely repeated games played by boundedly rational agents. More precisely, we show the usefulness of both theories to improve the existing automata bounds of Neyman¿s (1998) work on finitely repeated games played by finite automata.

Complexity codification repeated games finite automataTheoretical computer scienceFinite-state machineSociology and Political Sciencejel:C72jel:C73ComputingMilieux_PERSONALCOMPUTINGGeneral Social SciencesRational agentInformation theoryAutomatonRepeated gameAutomata theoryQuantum finite automataStatistics Probability and UncertaintyCommunications protocolGeneral PsychologyMathematicsMathematical Social Sciences
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